Starting point for initial conditions:
/glade/scratch/dlawren/archive/clm5r139bgc_2degGSWP3_spinf/rest/0961-01-01-00000/clm5r139bgc_2degGSWP3_spinf.clm2.r.0961-01-01-00000.nc

Tag used for this work:
https://svn-ccsm-models.cgd.ucar.edu/clm2/branch_tags/initinterp_vertical_tags/initinterp_vertical_n17_clm4_5_3_r142

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Getting the necessary metadata onto the file, so it can be run through CLM's new
version of init_interp:

ncks -A -v COL_Z,LEVGRND_CLASS,COL_Z_p,LEVGRND_CLASS_p /glade/scratch/sacks/archive/noninterp_f19_noncrop_1024/rest/0001-02-01-00000/noninterp_f19_noncrop_1024.clm2.r.0001-02-01-00000.nc /glade/p/cesm/lmwg_dev/sacks/clm5r139bgc_2degGSWP3_spinf_plusMetadata.clm2.r.0961-01-01-00000_c151024.nc

where the run used to create the necessary metadata was set up as:

[yslogin3:/glade/scratch/sacks/cesm_code/initinterp_vertical_n17_clm4_5_3_r142/cime/scripts]$ ./create_newcase -user_compset 1850_DATM%QIA_CLM50%BGC_SICE_SOCN_RTM_CISM1_SWAV -res f19_g16_gl5 -user_pes_setby clm -case noninterp_f19_noncrop_1024 -mach yellowstone

./case_setup

cp /glade/p/work/dlawren/clm4_5_3_r140/cime/scripts/test_clm5bgc_r140/user_nl_clm .

echo "finidat='/glade/scratch/dlawren/archive/clm5r139bgc_2degGSWP3_spinf/rest/0961-01-01-00000/clm5r139bgc_2degGSWP3_spinf.clm2.r.0961-01-01-00000.nc'" >> user_nl_clm

echo "fsurdat='/glade/p/cesmdata/cseg/inputdata/lnd/clm2/surfdata_map/surfdata_1.9x2.5_16pfts_simyr1850_c151014.nc'" >> user_nl_clm

./xmlchange STOP_OPTION=nmonths,STOP_N=1

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Continuing the spinup at f09:

[yslogin3:/glade/scratch/sacks/cesm_code/initinterp_vertical_n17_clm4_5_3_r142/cime/scripts]$ ./create_newcase -user_compset 1850_DATM%CRU_CLM50%BGC-CROP_SICE_SOCN_RTM_CISM1_SWAV -res f09_g16_gl5 -user_pes_setby clm -case clm5r142bgccrop_1degGSWP3 -mach yellowstone

./xmlchange CLM_BLDNML_OPTS=-crop -append

./case_setup

cp /glade/p/work/dlawren/clm4_5_3_r140/cime/scripts/test_clm5bgc_r140/user_nl_clm .

echo "finidat='/glade/p/cesm/lmwg_dev/sacks/clm5r139bgc_2degGSWP3_spinf_plusMetadata.clm2.r.0961-01-01-00000_c151024.nc'" >> user_nl_clm

echo "use_init_interp=.true." >> user_nl_clm
echo "init_interp_fill_missing_with_natveg = .true." >> user_nl_clm

cp /glade/p/work/swensosc//cesm_code/user_datm_files/GSWP3/* .

Ran for 70 years

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Continuing the spinup longer with glacier evolution off (glacier evolution was
accidentally left on in the initial run; this shouldn't affect the restart file
in any substantive way, so it is safe to continue a run with glacier evolution
off from that point):

[yslogin3:/glade/scratch/sacks/cesm_code/initinterp_vertical_n17_clm4_5_3_r142/cime/scripts]$ ./create_newcase -user_compset 1850_DATM%CRU_CLM50%BGC-CROP_SICE_SOCN_RTM_CISM1_SWAV -res f09_g16_gl5 -user_pes_setby clm -case clm5r142bgccrop_1degGSWP3_staticGLC -mach yellowstone

./xmlchange CLM_BLDNML_OPTS=-crop -append

./case_setup

cp /glade/p/work/dlawren/clm4_5_3_r140/cime/scripts/test_clm5bgc_r140/user_nl_clm .

echo "finidat='/glade/p/cesm/lmwg_dev/sacks/clm5r142bgccrop_1degGSWP3/clm5r142bgccrop_1degGSWP3.clm2.r.0071-01-01-00000.nc'" >> user_nl_clm

echo "evolve_ice = 0" >> user_nl_cism
echo "zero_gcm_fluxes = 1" >> user_nl_cism

./xmlchange STOP_OPTION=nyears,STOP_N=2

cp /glade/p/work/swensosc//cesm_code/user_datm_files/GSWP3/* .

Ran for 46 additional years